Variant report

Variant	rs73088299
Chromosome Location	chr1:215286298-215286299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11120520	1.00[EUR][1000 genomes]
rs11120521	1.00[EUR][1000 genomes]
rs11120523	1.00[EUR][1000 genomes]
rs11120553	1.00[EUR][1000 genomes]
rs11120555	1.00[EUR][1000 genomes]
rs11120556	1.00[EUR][1000 genomes]
rs12070211	1.00[EUR][1000 genomes]
rs12076291	1.00[EUR][1000 genomes]
rs12076683	1.00[EUR][1000 genomes]
rs12239472	1.00[EUR][1000 genomes]
rs12239509	1.00[EUR][1000 genomes]
rs13374480	1.00[EUR][1000 genomes]
rs1416650	1.00[EUR][1000 genomes]
rs1556904	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2363552	1.00[EUR][1000 genomes]
rs2363555	0.87[AMR][1000 genomes]
rs2363562	1.00[EUR][1000 genomes]
rs4581247	1.00[EUR][1000 genomes]
rs4593794	1.00[EUR][1000 genomes]
rs4633260	1.00[EUR][1000 genomes]
rs5019190	1.00[EUR][1000 genomes]
rs61272547	1.00[EUR][1000 genomes]
rs6678266	1.00[EUR][1000 genomes]
rs73088281	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7528816	1.00[EUR][1000 genomes]
rs7550501	1.00[EUR][1000 genomes]
rs950987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215278200-215286600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:215281600-215287400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:215283400-215291200	Weak transcription	Fetal Brain Female	brain
4	chr1:215285400-215287000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215285400-215287200	Enhancers	Osteobl	bone
6	chr1:215285400-215287800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:215285600-215286600	Weak transcription	NHEK	skin
8	chr1:215285600-215286800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:215285600-215287000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:215285600-215287200	Weak transcription	NHLF	lung
11	chr1:215285800-215286800	Weak transcription	HMEC	breast
12	chr1:215286000-215286600	Genic enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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