Variant report

Variant	rs73090179
Chromosome Location	chr1:215534156-215534157
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215531102..215532894-chr1:215533168..215535488,2	MCF-7	breast:

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10127809	0.92[ASN][1000 genomes]
rs10494998	1.00[ASN][1000 genomes]
rs10494999	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11120554	0.93[ASN][1000 genomes]
rs11120588	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11120591	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12062740	1.00[ASN][1000 genomes]
rs12064396	1.00[ASN][1000 genomes]
rs12066481	1.00[ASN][1000 genomes]
rs12070874	1.00[ASN][1000 genomes]
rs12080428	1.00[ASN][1000 genomes]
rs12084684	1.00[ASN][1000 genomes]
rs12089271	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12093830	1.00[ASN][1000 genomes]
rs13375155	0.82[AFR][1000 genomes]
rs13376274	1.00[ASN][1000 genomes]
rs13376355	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395722	1.00[ASN][1000 genomes]
rs1557172	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17024732	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024744	0.92[ASN][1000 genomes]
rs17024755	0.92[ASN][1000 genomes]
rs17024758	0.92[ASN][1000 genomes]
rs1876407	1.00[ASN][1000 genomes]
rs1876408	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2885989	0.92[ASN][1000 genomes]
rs35134381	0.92[ASN][1000 genomes]
rs3753837	1.00[EUR][1000 genomes]
rs3753838	1.00[EUR][1000 genomes]
rs3767260	1.00[EUR][1000 genomes]
rs3767262	1.00[EUR][1000 genomes]
rs3845523	1.00[ASN][1000 genomes]
rs4607849	0.92[ASN][1000 genomes]
rs56802573	1.00[ASN][1000 genomes]
rs56956076	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56988669	0.85[ASN][1000 genomes]
rs57110734	0.92[ASN][1000 genomes]
rs57179404	1.00[EUR][1000 genomes]
rs57186357	0.81[AFR][1000 genomes]
rs57309511	0.92[ASN][1000 genomes]
rs57379455	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57563355	1.00[EUR][1000 genomes]
rs57628126	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57758604	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57792259	0.85[ASN][1000 genomes]
rs57935471	1.00[EUR][1000 genomes]
rs58102262	1.00[EUR][1000 genomes]
rs58133122	0.96[AFR][1000 genomes]
rs58163611	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58330534	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58342290	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58425452	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58542168	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58557470	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58594611	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58597977	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58629829	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58649725	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58682085	1.00[EUR][1000 genomes]
rs58836680	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58919310	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59026507	1.00[EUR][1000 genomes]
rs59040705	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59233975	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59577074	1.00[EUR][1000 genomes]
rs59628625	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59636344	1.00[EUR][1000 genomes]
rs60026262	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60365921	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60404320	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60620576	0.92[ASN][1000 genomes]
rs61057668	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61059263	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61167296	1.00[ASN][1000 genomes]
rs61343540	0.85[ASN][1000 genomes]
rs61362928	0.93[ASN][1000 genomes]
rs61368758	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61400453	1.00[ASN][1000 genomes]
rs61600848	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61618553	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61633090	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61685588	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6674016	1.00[ASN][1000 genomes]
rs6678049	1.00[ASN][1000 genomes]
rs6679048	1.00[ASN][1000 genomes]
rs6686570	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6689680	1.00[EUR][1000 genomes]
rs6700397	1.00[EUR][1000 genomes]
rs73081443	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73081447	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73081459	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73081470	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73081479	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73081487	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73081497	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73083403	1.00[EUR][1000 genomes]
rs73083410	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73083415	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73083420	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73083421	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73083429	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73083436	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73083437	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73083461	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73083470	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73083500	1.00[EUR][1000 genomes]
rs73085404	1.00[EUR][1000 genomes]
rs73085410	1.00[EUR][1000 genomes]
rs73090166	1.00[ASN][1000 genomes]
rs73090172	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73090177	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73091957	0.93[AFR][1000 genomes]
rs73091959	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73091984	0.92[ASN][1000 genomes]
rs73091986	0.92[ASN][1000 genomes]
rs73091998	0.92[ASN][1000 genomes]
rs73094106	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73094120	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73094142	1.00[EUR][1000 genomes]
rs73100105	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73100108	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73100110	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73100116	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73100129	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73100141	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7545425	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215530600-215534200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:215533200-215534400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:215533400-215534400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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