Variant report

Variant	rs73091976
Chromosome Location	chr1:215551309-215551310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215550395..215553289-chr1:215632429..215635331,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10127809	0.94[AFR][1000 genomes]
rs10465665	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10864176	1.00[EUR][1000 genomes]
rs11120520	1.00[EUR][1000 genomes]
rs11120521	1.00[EUR][1000 genomes]
rs11120523	1.00[EUR][1000 genomes]
rs11120553	1.00[EUR][1000 genomes]
rs11120555	1.00[EUR][1000 genomes]
rs11120556	1.00[EUR][1000 genomes]
rs11120570	1.00[EUR][1000 genomes]
rs11120571	1.00[EUR][1000 genomes]
rs11120572	1.00[EUR][1000 genomes]
rs11120573	1.00[EUR][1000 genomes]
rs11120574	1.00[EUR][1000 genomes]
rs12061570	1.00[EUR][1000 genomes]
rs12070211	1.00[EUR][1000 genomes]
rs12074526	1.00[EUR][1000 genomes]
rs12076291	1.00[EUR][1000 genomes]
rs12076683	1.00[EUR][1000 genomes]
rs12077050	1.00[EUR][1000 genomes]
rs12077731	1.00[EUR][1000 genomes]
rs12077775	1.00[EUR][1000 genomes]
rs12078628	1.00[EUR][1000 genomes]
rs12079873	1.00[EUR][1000 genomes]
rs12080017	1.00[EUR][1000 genomes]
rs12094048	1.00[EUR][1000 genomes]
rs12095159	1.00[EUR][1000 genomes]
rs12239472	1.00[EUR][1000 genomes]
rs12239509	1.00[EUR][1000 genomes]
rs13374480	1.00[EUR][1000 genomes]
rs13374655	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1416650	1.00[EUR][1000 genomes]
rs1556904	1.00[EUR][1000 genomes]
rs17024391	1.00[EUR][1000 genomes]
rs17024744	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17024751	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024755	0.95[AFR][1000 genomes]
rs17024758	0.95[AFR][1000 genomes]
rs17024855	1.00[EUR][1000 genomes]
rs1911547	1.00[EUR][1000 genomes]
rs35134381	0.92[AFR][1000 genomes]
rs4082520	1.00[EUR][1000 genomes]
rs4082521	1.00[EUR][1000 genomes]
rs4265403	1.00[EUR][1000 genomes]
rs4593794	1.00[EUR][1000 genomes]
rs4607849	0.93[AFR][1000 genomes]
rs4633260	1.00[EUR][1000 genomes]
rs5019190	1.00[EUR][1000 genomes]
rs56799360	1.00[EUR][1000 genomes]
rs57309511	0.95[AFR][1000 genomes]
rs57501351	1.00[EUR][1000 genomes]
rs59473177	1.00[EUR][1000 genomes]
rs60597792	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61070702	1.00[EUR][1000 genomes]
rs61272547	1.00[EUR][1000 genomes]
rs6678266	1.00[EUR][1000 genomes]
rs6690170	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6695816	1.00[EUR][1000 genomes]
rs73091981	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091984	0.97[AFR][1000 genomes]
rs73091986	0.97[AFR][1000 genomes]
rs73091996	1.00[EUR][1000 genomes]
rs7516768	1.00[EUR][1000 genomes]
rs950987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215549000-215551600	Enhancers	Osteobl	bone
2	chr1:215549600-215551600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:215549800-215551800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:215550800-215551400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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