Variant report

Variant	rs73092254
Chromosome Location	chr1:220601699-220601700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220594605..220597600-chr1:220599803..220603314,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12562165	0.91[EUR][1000 genomes]
rs12562172	0.91[EUR][1000 genomes]
rs12563333	0.91[EUR][1000 genomes]
rs12563560	0.91[EUR][1000 genomes]
rs12563619	1.00[EUR][1000 genomes]
rs12564062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12568872	0.91[EUR][1000 genomes]
rs12568969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1338775	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1933881	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55875950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56659017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57725868	1.00[EUR][1000 genomes]
rs60843898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6669351	0.96[EUR][1000 genomes]
rs6685446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6688366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73092253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73092264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73092269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73092271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73092272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73092273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73092281	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73092282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74139652	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74139653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74139668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74139669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7537705	0.91[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220598800-220603400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:220599800-220603200	Weak transcription	Placenta	Placenta
3	chr1:220600800-220603200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:220600800-220603400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:220601000-220603200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:220601000-220603400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:220601000-220603400	Weak transcription	HMEC	breast
8	chr1:220601000-220604800	Weak transcription	Adipose Nuclei	Adipose
9	chr1:220601200-220603400	Weak transcription	NHEK	skin
10	chr1:220601400-220602400	Weak transcription	Hela-S3	cervix

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