Variant report

Variant	rs73092761
Chromosome Location	chr1:220870326-220870327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220869909..220871487-chr1:220872006..220873594,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs14850	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs337186	1.00[AMR][1000 genomes]
rs60139975	1.00[AMR][1000 genomes]
rs6702417	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6703686	0.81[AFR][1000 genomes]
rs73092762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73107690	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468194	chr1:220845610-220885612	Bivalent Enhancer Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv549227	chr1:220845610-220885612	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2754270	chr1:220850116-220929155	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220865200-220873200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:220865200-220874200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:220865200-220879200	Weak transcription	Ovary	ovary
4	chr1:220865400-220870800	Weak transcription	Brain Angular Gyrus	brain
5	chr1:220865400-220873200	Weak transcription	Fetal Brain Female	brain
6	chr1:220865400-220873800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr1:220865400-220874400	Weak transcription	Colonic Mucosa	Colon
8	chr1:220865400-220876200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:220865600-220870800	Weak transcription	Brain Anterior Caudate	brain
10	chr1:220866000-220872400	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:220866000-220873400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:220866000-220873600	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:220866600-220872400	Weak transcription	Fetal Brain Male	brain
14	chr1:220866600-220879600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:220867200-220870600	Weak transcription	Fetal Lung	lung
16	chr1:220867800-220870400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr1:220868400-220873200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:220868400-220873600	Strong transcription	Fetal Intestine Small	intestine
19	chr1:220868800-220870400	Weak transcription	Lung	lung
20	chr1:220869800-220870600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:220869800-220870800	Strong transcription	Fetal Intestine Large	intestine
22	chr1:220869800-220871600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:220869800-220872000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:220869800-220872000	Genic enhancers	Placenta	Placenta
25	chr1:220869800-220872600	Strong transcription	Duodenum Mucosa	Duodenum
26	chr1:220870000-220870600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:220870000-220870600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr1:220870000-220871000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:220870000-220871400	Strong transcription	Aorta	Aorta
30	chr1:220870000-220871600	Strong transcription	Left Ventricle	heart
31	chr1:220870000-220871600	Strong transcription	Pancreas	Pancrea
32	chr1:220870000-220871800	Strong transcription	Adipose Nuclei	Adipose
33	chr1:220870000-220872000	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr1:220870000-220872600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:220870000-220872800	Genic enhancers	Liver	Liver
36	chr1:220870000-220873600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr1:220870200-220870400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr1:220870200-220870400	Genic enhancers	Right Ventricle	heart
39	chr1:220870200-220870600	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr1:220870200-220871000	Strong transcription	HepG2	liver
41	chr1:220870200-220871400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr1:220870200-220871400	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr1:220870200-220871600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr1:220870200-220871600	Strong transcription	Gastric	stomach
45	chr1:220870200-220871600	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr1:220870200-220871800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr1:220870200-220871800	Strong transcription	Spleen	Spleen
48	chr1:220870200-220872000	Strong transcription	Sigmoid Colon	Sigmoid Colon

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