Variant report

Variant	rs73093136
Chromosome Location	chr5:59829141-59829142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10036678	0.91[ASN][1000 genomes]
rs10044835	0.91[ASN][1000 genomes]
rs10065640	0.82[ASN][1000 genomes]
rs10074908	0.91[ASN][1000 genomes]
rs10075757	0.82[ASN][1000 genomes]
rs16878206	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16878207	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2409763	0.83[AFR][1000 genomes]
rs3857235	0.82[ASN][1000 genomes]
rs4081739	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4133470	0.88[EUR][1000 genomes]
rs6449475	0.82[ASN][1000 genomes]
rs6891919	0.82[ASN][1000 genomes]
rs6898521	0.82[ASN][1000 genomes]
rs7712091	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7712117	0.82[ASN][1000 genomes]
rs7723306	0.91[ASN][1000 genomes]
rs7724442	0.82[ASN][1000 genomes]
rs7729652	0.82[ASN][1000 genomes]
rs7729781	0.82[ASN][1000 genomes]
rs9291692	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1018614	chr5:59708223-59910308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv881711	chr5:59724947-59890278	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv598297	chr5:59734004-59862453	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59823800-59829200	Weak transcription	Brain Substantia Nigra	brain
2	chr5:59824000-59834200	Weak transcription	Brain Angular Gyrus	brain
3	chr5:59828000-59834800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:59828000-59837000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:59828400-59829600	Enhancers	GM12878-XiMat	blood
6	chr5:59828600-59830000	Enhancers	HepG2	liver
7	chr5:59829000-59829400	Enhancers	Aorta	Aorta
8	chr5:59829000-59829600	Enhancers	Primary B cells from cord blood	blood
9	chr5:59829000-59831800	Enhancers	Primary B cells from peripheral blood	blood

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