Variant report

Variant	rs73093141
Chromosome Location	chr5:59836087-59836088
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:59831215..59833995-chr5:59834537..59838360,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10516153	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878197	1.00[AMR][1000 genomes]
rs16878201	0.90[AMR][1000 genomes]
rs16878203	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878205	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878228	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3846458	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3846459	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3846460	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3857233	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3857234	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4133469	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58709164	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60446062	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60568722	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093122	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093127	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093138	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73110513	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73110519	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73110526	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719584	0.83[AMR][1000 genomes]
rs7723069	1.00[AMR][1000 genomes]
rs7737012	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1018614	chr5:59708223-59910308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv881711	chr5:59724947-59890278	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv598297	chr5:59734004-59862453	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59828000-59837000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:59833400-59838200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:59833400-59838800	Enhancers	Primary T cells from cord blood	blood
4	chr5:59834000-59839200	Enhancers	Primary B cells from peripheral blood	blood
5	chr5:59834200-59838200	Enhancers	Brain Angular Gyrus	brain
6	chr5:59834600-59836200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr5:59834600-59838200	Enhancers	Brain Substantia Nigra	brain
8	chr5:59834800-59836600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:59835000-59837000	Enhancers	GM12878-XiMat	blood
10	chr5:59835200-59839000	Enhancers	HepG2	liver
11	chr5:59835400-59836200	Enhancers	Brain Hippocampus Middle	brain
12	chr5:59835400-59836400	Enhancers	Gastric	stomach
13	chr5:59835400-59837600	Enhancers	Ovary	ovary
14	chr5:59835600-59836600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:59835600-59837000	Enhancers	Osteobl	bone
16	chr5:59835600-59837400	Weak transcription	Stomach Mucosa	stomach
17	chr5:59835600-59838200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:59835600-59838200	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr5:59835800-59836400	Enhancers	Primary B cells from cord blood	blood
20	chr5:59835800-59836800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:59835800-59836800	Enhancers	Adipose Nuclei	Adipose
22	chr5:59835800-59836800	Weak transcription	Fetal Thymus	thymus
23	chr5:59835800-59837000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr5:59835800-59837600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr5:59835800-59838000	Enhancers	Primary hematopoietic stem cells	blood
26	chr5:59835800-59840600	Weak transcription	Colon Smooth Muscle	Colon
27	chr5:59836000-59836200	Enhancers	Fetal Stomach	stomach
28	chr5:59836000-59837000	Weak transcription	Fetal Muscle Leg	muscle
29	chr5:59836000-59837000	Weak transcription	Left Ventricle	heart
30	chr5:59836000-59837000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr5:59836000-59837200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr5:59836000-59838000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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