Variant report

Variant	rs73093145
Chromosome Location	chr5:59837767-59837768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:59831215..59833995-chr5:59834537..59838360,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7729652	0.82[ASN][1000 genomes]
rs7729781	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1018614	chr5:59708223-59910308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv881711	chr5:59724947-59890278	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv598297	chr5:59734004-59862453	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59833400-59838200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:59833400-59838800	Enhancers	Primary T cells from cord blood	blood
3	chr5:59834000-59839200	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:59834200-59838200	Enhancers	Brain Angular Gyrus	brain
5	chr5:59834600-59838200	Enhancers	Brain Substantia Nigra	brain
6	chr5:59835200-59839000	Enhancers	HepG2	liver
7	chr5:59835600-59838200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:59835600-59838200	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr5:59835800-59838000	Enhancers	Primary hematopoietic stem cells	blood
10	chr5:59835800-59840600	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:59836000-59838000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:59836400-59838000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:59836400-59838200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr5:59836400-59838200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:59836400-59838200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:59836400-59838400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:59836400-59840400	Weak transcription	Gastric	stomach
18	chr5:59836400-59842000	Weak transcription	Fetal Stomach	stomach
19	chr5:59836600-59838000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:59836600-59838000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr5:59836800-59837800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:59836800-59838200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr5:59836800-59839200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr5:59837000-59837800	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr5:59837000-59837800	Active TSS	Adipose Nuclei	Adipose
26	chr5:59837000-59838000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr5:59837000-59838000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:59837000-59838000	Enhancers	Brain Hippocampus Middle	brain
29	chr5:59837000-59838000	Enhancers	Rectal Smooth Muscle	rectum
30	chr5:59837000-59838000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr5:59837000-59838000	Flanking Active TSS	Osteobl	bone
32	chr5:59837000-59838200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:59837000-59838200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:59837000-59838200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr5:59837000-59838200	Enhancers	Fetal Muscle Leg	muscle
36	chr5:59837000-59838200	Flanking Active TSS	GM12878-XiMat	blood
37	chr5:59837000-59838800	Enhancers	Aorta	Aorta
38	chr5:59837200-59838000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr5:59837200-59838000	Enhancers	Fetal Intestine Small	intestine
40	chr5:59837200-59838000	Enhancers	NH-A	brain
41	chr5:59837400-59838000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr5:59837400-59838200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr5:59837400-59838200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr5:59837400-59838200	Enhancers	Stomach Mucosa	stomach
45	chr5:59837600-59837800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr5:59837600-59837800	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr5:59837600-59838000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr5:59837600-59838200	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr5:59837600-59838200	Enhancers	Placenta	Placenta
50	chr5:59837600-59839200	Enhancers	Stomach Smooth Muscle	stomach

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