Variant report

Variant	rs73094111
Chromosome Location	chr1:215592106-215592107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs60973422	0.90[AFR][1000 genomes]
rs61388332	0.90[AFR][1000 genomes]
rs61600848	1.00[AFR][1000 genomes]
rs6540898	0.90[AFR][1000 genomes]
rs73092000	1.00[AFR][1000 genomes]
rs73094106	1.00[AFR][1000 genomes]
rs73094115	1.00[AFR][1000 genomes]
rs73094123	1.00[AFR][1000 genomes]
rs73098198	0.90[AFR][1000 genomes]
rs73098201	0.90[AFR][1000 genomes]
rs73100121	0.90[AFR][1000 genomes]
rs7536789	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215590000-215593000	Enhancers	Osteobl	bone
2	chr1:215590400-215592200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr1:215590400-215592200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:215590600-215592600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:215590600-215594400	Weak transcription	NHDF-Ad	bronchial
6	chr1:215590800-215594800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:215592000-215592600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:215592000-215592600	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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