Variant report

Variant	rs73094115
Chromosome Location	chr1:215592891-215592892
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs60973422	0.90[AFR][1000 genomes]
rs61388332	0.90[AFR][1000 genomes]
rs61600848	1.00[AFR][1000 genomes]
rs6540898	0.90[AFR][1000 genomes]
rs73092000	1.00[AFR][1000 genomes]
rs73094106	1.00[AFR][1000 genomes]
rs73094111	1.00[AFR][1000 genomes]
rs73094123	1.00[AFR][1000 genomes]
rs73098198	0.90[AFR][1000 genomes]
rs73098201	0.90[AFR][1000 genomes]
rs73100121	0.90[AFR][1000 genomes]
rs7536789	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215590000-215593000	Enhancers	Osteobl	bone
2	chr1:215590600-215594400	Weak transcription	NHDF-Ad	bronchial
3	chr1:215590800-215594800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:215592200-215593000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:215592200-215593000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:215592400-215594600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:215592600-215594400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr1:215592600-215594800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:215592600-215596000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:215592800-215594600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr1:215592800-215595000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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