Variant report

Variant	rs73094451
Chromosome Location	chr12:39856134-39856135
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:39835363..39838062-chr12:39856075..39859606,4	MCF-7	breast:
2	chr12:39851389..39852917-chr12:39854609..39856885,2	K562	blood:

Variant related genes	Relation type
ENSG00000139116	Chromatin interaction
ENSG00000252974	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1567738	1.00[AMR][1000 genomes]
rs73086879	1.00[AMR][1000 genomes]
rs73086887	1.00[AMR][1000 genomes]
rs73086888	1.00[AMR][1000 genomes]
rs73086895	1.00[AMR][1000 genomes]
rs73086896	1.00[AMR][1000 genomes]
rs73088803	1.00[AMR][1000 genomes]
rs73088804	1.00[AMR][1000 genomes]
rs73088806	1.00[AMR][1000 genomes]
rs73088808	1.00[AMR][1000 genomes]
rs73088811	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088812	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094497	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094498	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094499	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094502	1.00[AMR][1000 genomes]
rs73096503	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096504	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096507	1.00[AMR][1000 genomes]
rs73096509	1.00[AMR][1000 genomes]
rs73096513	1.00[AMR][1000 genomes]
rs73096521	1.00[AMR][1000 genomes]
rs73096524	1.00[AMR][1000 genomes]
rs73096528	1.00[AMR][1000 genomes]
rs73096539	1.00[AMR][1000 genomes]
rs73096542	1.00[AMR][1000 genomes]
rs73096551	1.00[AMR][1000 genomes]
rs73096571	1.00[AMR][1000 genomes]
rs73096578	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1044049	chr12:39845078-39922808	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1051709	chr12:39846990-39899051	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39854600-39858800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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