Variant report
| Variant | rs73095459 |
|---|---|
| Chromosome Location | chr20:24122984-24122985 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs55771985 | 1.00[ASN][1000 genomes] |
| rs6076184 | 1.00[ASN][1000 genomes] |
| rs6076185 | 1.00[ASN][1000 genomes] |
| rs6076190 | 1.00[ASN][1000 genomes] |
| rs6076194 | 1.00[ASN][1000 genomes] |
| rs6083374 | 1.00[ASN][1000 genomes] |
| rs6083375 | 1.00[ASN][1000 genomes] |
| rs6083378 | 1.00[ASN][1000 genomes] |
| rs6083379 | 1.00[ASN][1000 genomes] |
| rs6083382 | 1.00[ASN][1000 genomes] |
| rs6083383 | 1.00[ASN][1000 genomes] |
| rs6083386 | 1.00[ASN][1000 genomes] |
| rs6083388 | 1.00[ASN][1000 genomes] |
| rs6083390 | 1.00[ASN][1000 genomes] |
| rs6083391 | 1.00[ASN][1000 genomes] |
| rs6083398 | 1.00[ASN][1000 genomes] |
| rs6083400 | 1.00[ASN][1000 genomes] |
| rs6083404 | 1.00[ASN][1000 genomes] |
| rs962527 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9793 | chr20:23939613-24734850 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv3328348 | chr20:24095746-24285830 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv2755330 | chr20:24114903-24130700 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:24119800-24124200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
