Variant report

Variant	rs73096524
Chromosome Location	chr12:39952065-39952066
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1567738	1.00[AMR][1000 genomes]
rs73086879	1.00[AMR][1000 genomes]
rs73086887	1.00[AMR][1000 genomes]
rs73086888	1.00[AMR][1000 genomes]
rs73086895	1.00[AMR][1000 genomes]
rs73086896	1.00[AMR][1000 genomes]
rs73088803	1.00[AMR][1000 genomes]
rs73088804	1.00[AMR][1000 genomes]
rs73088806	1.00[AMR][1000 genomes]
rs73088808	1.00[AMR][1000 genomes]
rs73088811	1.00[AMR][1000 genomes]
rs73088812	1.00[AMR][1000 genomes]
rs73094416	1.00[AMR][1000 genomes]
rs73094426	1.00[AMR][1000 genomes]
rs73094430	1.00[AMR][1000 genomes]
rs73094441	1.00[AMR][1000 genomes]
rs73094443	1.00[AMR][1000 genomes]
rs73094451	1.00[AMR][1000 genomes]
rs73094465	1.00[AMR][1000 genomes]
rs73094466	1.00[AMR][1000 genomes]
rs73094469	1.00[AMR][1000 genomes]
rs73094480	1.00[AMR][1000 genomes]
rs73094482	1.00[AMR][1000 genomes]
rs73094497	1.00[AMR][1000 genomes]
rs73094498	1.00[AMR][1000 genomes]
rs73094499	1.00[AMR][1000 genomes]
rs73094502	1.00[AMR][1000 genomes]
rs73096503	1.00[AMR][1000 genomes]
rs73096504	1.00[AMR][1000 genomes]
rs73096507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096528	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096539	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096542	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096551	1.00[AMR][1000 genomes]
rs73096571	1.00[AMR][1000 genomes]
rs73096578	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1037457	chr12:39898349-40245401	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv541480	chr12:39898349-40245401	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1039645	chr12:39903123-40022029	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv522940	chr12:39946354-39998144	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv469359	chr12:39946354-40034699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv558591	chr12:39946354-40034699	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv469361	chr12:39946354-40042220	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv558592	chr12:39946354-40042220	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv899014	chr12:39946354-40068896	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv899015	chr12:39946354-40118249	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv899016	chr12:39949147-40004906	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv899017	chr12:39949147-40081619	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
14	nsv899018	chr12:39949147-40111761	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39946200-39952200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr12:39946400-39952400	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr12:39948800-40000000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr12:39949600-39953000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr12:39950200-39953000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
6	chr12:39950600-39952800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr12:39950800-39952400	Strong transcription	Primary T cells from cord blood	blood
8	chr12:39951000-39955400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr12:39951200-39952400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr12:39951200-39953000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:39951200-39953000	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr12:39951400-39952400	ZNF genes & repeats	Fetal Brain Female	brain
13	chr12:39951400-39952600	ZNF genes & repeats	Spleen	Spleen
14	chr12:39951400-39953000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr12:39951400-39953200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr12:39951400-39953800	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr12:39951400-39953800	ZNF genes & repeats	GM12878-XiMat	blood
18	chr12:39951400-39955000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr12:39951600-39952400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chr12:39951600-39952400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
21	chr12:39951600-39953400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
22	chr12:39951600-39953600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr12:39951600-39953800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr12:39951800-39952400	ZNF genes & repeats	Brain Hippocampus Middle	brain
25	chr12:39951800-39952600	Weak transcription	Brain Angular Gyrus	brain
26	chr12:39951800-39952800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr12:39952000-39952200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr12:39952000-39953800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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