Variant report

Variant	rs73101828
Chromosome Location	chr12:40431766-40431767
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11564154	1.00[AMR][1000 genomes]
rs11564188	1.00[AMR][1000 genomes]
rs11564189	1.00[AMR][1000 genomes]
rs11564191	1.00[AMR][1000 genomes]
rs11564195	1.00[AMR][1000 genomes]
rs11564211	1.00[AMR][1000 genomes]
rs17519531	1.00[AMR][1000 genomes]
rs17519580	1.00[AMR][1000 genomes]
rs73092794	1.00[AMR][1000 genomes]
rs73092800	1.00[AMR][1000 genomes]
rs73093531	1.00[AMR][1000 genomes]
rs73102253	1.00[AMR][1000 genomes]
rs73102259	1.00[AMR][1000 genomes]
rs73102280	1.00[AMR][1000 genomes]
rs73102282	1.00[AMR][1000 genomes]
rs73102293	1.00[AMR][1000 genomes]
rs73105433	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73105445	1.00[AMR][1000 genomes]
rs73105478	1.00[AMR][1000 genomes]
rs73105482	1.00[AMR][1000 genomes]
rs73106314	1.00[AMR][1000 genomes]
rs73106320	1.00[AMR][1000 genomes]
rs73106342	1.00[AMR][1000 genomes]
rs73106345	1.00[AMR][1000 genomes]
rs73106346	1.00[AMR][1000 genomes]
rs73107664	1.00[AMR][1000 genomes]
rs73107677	1.00[AMR][1000 genomes]
rs7316047	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7966059	1.00[AMR][1000 genomes]
rs7974320	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv558596	chr12:40413698-40591117	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv558597	chr12:40414631-40442892	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40394400-40448400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr12:40405400-40445200	Weak transcription	K562	blood
3	chr12:40416600-40441800	Weak transcription	Ovary	ovary
4	chr12:40419000-40447600	Weak transcription	Hela-S3	cervix
5	chr12:40421600-40453400	Weak transcription	Left Ventricle	heart
6	chr12:40426400-40452800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr12:40428000-40436400	Weak transcription	Fetal Intestine Large	intestine
8	chr12:40428000-40452600	Weak transcription	Fetal Intestine Small	intestine
9	chr12:40429000-40433400	Weak transcription	Fetal Lung	lung
10	chr12:40429400-40441000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:40430000-40433000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr12:40431400-40432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links