Variant report

Variant	rs73102280
Chromosome Location	chr12:40602135-40602136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11564105	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564112	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564134	1.00[AMR][1000 genomes]
rs11564154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564174	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564195	1.00[AMR][1000 genomes]
rs11564208	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564257	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564261	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17519531	1.00[AMR][1000 genomes]
rs17519580	1.00[AMR][1000 genomes]
rs3906865	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092794	1.00[AMR][1000 genomes]
rs73092800	1.00[AMR][1000 genomes]
rs73093531	1.00[AMR][1000 genomes]
rs73094944	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094986	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097442	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097447	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097459	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097463	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73097494	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73101828	1.00[AMR][1000 genomes]
rs73102253	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102259	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102750	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102757	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102773	1.00[AMR][1000 genomes]
rs73105433	1.00[AMR][1000 genomes]
rs73105445	1.00[AMR][1000 genomes]
rs73105478	1.00[AMR][1000 genomes]
rs73105482	1.00[AMR][1000 genomes]
rs73106314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106342	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106345	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106346	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106349	1.00[AMR][1000 genomes]
rs73106357	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73107134	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73107137	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73107664	1.00[AMR][1000 genomes]
rs73107677	1.00[AMR][1000 genomes]
rs73108321	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108336	0.86[AFR][1000 genomes]
rs73108345	1.00[AMR][1000 genomes]
rs73108347	1.00[AMR][1000 genomes]
rs73108352	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108357	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108363	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108365	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108371	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108376	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7315719	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7315853	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7316047	1.00[AMR][1000 genomes]
rs7966059	1.00[AMR][1000 genomes]
rs7974320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044685	chr12:40574460-40771612	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40597200-40602200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:40597200-40602200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr12:40597200-40602200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:40600200-40602200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr12:40600200-40602400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr12:40601200-40602600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:40601400-40604400	Enhancers	Primary B cells from peripheral blood	blood
8	chr12:40601600-40604400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr12:40601800-40602200	Enhancers	Primary B cells from cord blood	blood
10	chr12:40601800-40602400	Weak transcription	A549	lung
11	chr12:40601800-40602600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr12:40602000-40602400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:40602000-40603000	Weak transcription	Hela-S3	cervix
14	chr12:40602000-40603800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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