Variant report

Variant	rs73102397
Chromosome Location	chr20:23642034-23642035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23400166..23402418-chr20:23639659..23642260,2	K562	blood:

Variant related genes	Relation type
ENSG00000125814	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16985615	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73104304	0.93[EUR][1000 genomes]
rs8115833	0.93[EUR][1000 genomes]
rs8117359	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8123349	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3341096	chr20:23638652-23642850	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23637200-23643600	Weak transcription	Right Atrium	heart
2	chr20:23637200-23660000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:23637800-23644200	Enhancers	Fetal Intestine Large	intestine
4	chr20:23638200-23642200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr20:23638400-23644200	Enhancers	Fetal Intestine Small	intestine
6	chr20:23639400-23643200	Flanking Active TSS	HepG2	liver
7	chr20:23639800-23643400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr20:23640000-23642600	Enhancers	Duodenum Mucosa	Duodenum
9	chr20:23641000-23642200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr20:23641000-23642400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr20:23641200-23643000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr20:23641400-23642600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr20:23641800-23642200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr20:23641800-23642400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr20:23641800-23643000	Weak transcription	Fetal Muscle Leg	muscle
16	chr20:23641800-23647000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr20:23641800-23647200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr20:23641800-23647200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr20:23641800-23652200	Weak transcription	Adipose Nuclei	Adipose
20	chr20:23642000-23642600	Enhancers	Primary monocytes fromperipheralblood	blood

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