Variant report

Variant	rs73104981
Chromosome Location	chr12:40272888-40272889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs60093332	0.85[AFR][1000 genomes]
rs7305465	1.00[AMR][1000 genomes]
rs7305817	0.81[AFR][1000 genomes]
rs73087865	0.85[AFR][1000 genomes]
rs73092112	0.88[AFR][1000 genomes]
rs73092158	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73095613	0.85[AFR][1000 genomes]
rs73095657	0.85[AFR][1000 genomes]
rs73101286	1.00[AMR][1000 genomes]
rs73102528	0.85[AFR][1000 genomes]
rs73102537	0.85[AFR][1000 genomes]
rs73102556	0.81[AFR][1000 genomes]
rs73102559	0.81[AFR][1000 genomes]
rs73102562	0.81[AFR][1000 genomes]
rs73102575	0.88[AFR][1000 genomes]
rs73103036	1.00[AMR][1000 genomes]
rs73104971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73104975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73104978	1.00[AMR][1000 genomes]
rs73104984	1.00[AMR][1000 genomes]
rs7311368	0.85[AFR][1000 genomes]
rs7962740	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899025	chr12:40191778-40321846	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1049214	chr12:40197549-40326495	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40226400-40275000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr12:40262600-40280000	Weak transcription	Small Intestine	intestine
3	chr12:40271400-40273400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr12:40271600-40273800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:40271600-40274000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:40272000-40274000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr12:40272200-40273400	ZNF genes & repeats	Fetal Intestine Large	intestine
8	chr12:40272400-40274000	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr12:40272600-40273000	ZNF genes & repeats	Pancreas	Pancrea
10	chr12:40272600-40273400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr12:40272600-40274000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr12:40272600-40274000	ZNF genes & repeats	Aorta	Aorta
13	chr12:40272800-40273000	ZNF genes & repeats	Left Ventricle	heart
14	chr12:40272800-40273200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:40272800-40273400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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