Variant report

Variant	rs73106777
Chromosome Location	chr5:59639162-59639163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16877888	0.87[AMR][1000 genomes]
rs16877890	1.00[AMR][1000 genomes]
rs16877893	1.00[AMR][1000 genomes]
rs16877895	1.00[AMR][1000 genomes]
rs4460096	1.00[AMR][1000 genomes]
rs57172565	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60693366	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61497235	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6874690	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6875020	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6891047	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6892680	1.00[AMR][1000 genomes]
rs73104776	1.00[AMR][1000 genomes]
rs73104780	1.00[AMR][1000 genomes]
rs73104781	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106708	1.00[AMR][1000 genomes]
rs73106740	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106742	1.00[AMR][1000 genomes]
rs73106751	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106753	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106756	0.85[AMR][1000 genomes]
rs73106759	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106769	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106773	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106774	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7712352	0.87[AMR][1000 genomes]
rs7712697	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59625200-59646800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59635800-59639200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:59637400-59639200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:59637400-59642000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:59637800-59639600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:59637800-59643600	Weak transcription	Aorta	Aorta
7	chr5:59638000-59649400	Weak transcription	Fetal Brain Female	brain
8	chr5:59638600-59642000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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