Variant report

Variant	rs73106785
Chromosome Location	chr5:59647523-59647524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10056275	1.00[ASN][1000 genomes]
rs11745887	1.00[ASN][1000 genomes]
rs13157125	1.00[ASN][1000 genomes]
rs13186687	1.00[ASN][1000 genomes]
rs16878165	1.00[ASN][1000 genomes]
rs28531078	1.00[ASN][1000 genomes]
rs34072532	1.00[ASN][1000 genomes]
rs34886118	1.00[ASN][1000 genomes]
rs4513649	1.00[ASN][1000 genomes]
rs56679922	1.00[ASN][1000 genomes]
rs6860925	1.00[ASN][1000 genomes]
rs6868695	1.00[ASN][1000 genomes]
rs6868850	1.00[ASN][1000 genomes]
rs6879253	1.00[ASN][1000 genomes]
rs6882049	1.00[ASN][1000 genomes]
rs6889130	1.00[ASN][1000 genomes]
rs6889641	1.00[ASN][1000 genomes]
rs71627997	1.00[ASN][1000 genomes]
rs73759341	1.00[ASN][1000 genomes]
rs7700547	1.00[ASN][1000 genomes]
rs7707672	1.00[ASN][1000 genomes]
rs7708284	1.00[ASN][1000 genomes]
rs7709269	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59638000-59649400	Weak transcription	Fetal Brain Female	brain
2	chr5:59643000-59650000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:59644000-59649000	Weak transcription	Aorta	Aorta
4	chr5:59646200-59649000	Weak transcription	Fetal Brain Male	brain
5	chr5:59646400-59648200	Weak transcription	Gastric	stomach
6	chr5:59646400-59648800	Weak transcription	Pancreas	Pancrea
7	chr5:59647000-59655600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:59647200-59648800	Weak transcription	Stomach Mucosa	stomach
9	chr5:59647200-59658000	Weak transcription	Hela-S3	cervix
10	chr5:59647200-59694200	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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