Variant report

Variant	rs7310690
Chromosome Location	chr12:10892374-10892375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10873109..10875955-chr12:10892298..10895365,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000060138	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10845205	0.86[ASN][1000 genomes]
rs10845207	0.87[ASN][1000 genomes]
rs11053902	0.82[CHB][hapmap];0.86[YRI][hapmap];0.83[ASN][1000 genomes]
rs11053904	0.82[ASN][1000 genomes]
rs11053909	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs11053911	0.87[ASN][1000 genomes]
rs11053914	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs11053917	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11053977	0.88[AMR][1000 genomes]
rs1108542	0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[ASN][1000 genomes]
rs11830560	0.86[ASN][1000 genomes]
rs12226912	0.84[CEU][hapmap]
rs12231922	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs12423741	0.90[ASN][1000 genomes]
rs12425492	0.89[ASN][1000 genomes]
rs12581675	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2083958	0.89[ASN][1000 genomes]
rs4445727	0.87[ASN][1000 genomes]
rs7133840	0.84[AMR][1000 genomes]
rs7136530	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7138223	0.83[CHB][hapmap];0.89[ASN][1000 genomes]
rs73044637	0.89[ASN][1000 genomes]
rs73044645	0.84[ASN][1000 genomes]
rs7315801	1.00[ASW][hapmap];0.93[CEU][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7316817	0.93[CEU][hapmap];0.81[AMR][1000 genomes]
rs7963875	0.82[CHB][hapmap];0.81[CHD][hapmap];0.84[ASN][1000 genomes]
rs9668997	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10886400-10892400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:10891600-10892600	Enhancers	A549	lung
3	chr12:10891600-10893400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr12:10891600-10893800	Enhancers	K562	blood
5	chr12:10891800-10893000	Enhancers	Hela-S3	cervix
6	chr12:10892000-10893000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr12:10892000-10893400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr12:10892200-10893000	Enhancers	NHEK	skin
9	chr12:10892200-10893200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:10892200-10893400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr12:10892200-10893600	Enhancers	HMEC	breast

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