Variant report

Variant	rs73110509
Chromosome Location	chr5:59813161-59813162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11957512	0.99[EUR][1000 genomes]
rs11960912	0.99[EUR][1000 genomes]
rs2409763	0.91[EUR][1000 genomes]
rs3909458	0.96[EUR][1000 genomes]
rs7728865	0.87[EUR][1000 genomes]
rs7737238	0.94[EUR][1000 genomes]
rs9686946	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1018614	chr5:59708223-59910308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv881711	chr5:59724947-59890278	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv598297	chr5:59734004-59862453	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59801400-59813800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:59804200-59815800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:59806600-59814000	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:59806800-59813800	Weak transcription	Left Ventricle	heart
5	chr5:59806800-59816000	Weak transcription	Fetal Muscle Leg	muscle
6	chr5:59808800-59813800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:59810600-59816000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:59811800-59813600	Enhancers	Stomach Smooth Muscle	stomach
9	chr5:59812000-59814200	Enhancers	Gastric	stomach
10	chr5:59812200-59814000	Enhancers	Primary B cells from peripheral blood	blood
11	chr5:59812400-59816000	Weak transcription	Right Atrium	heart
12	chr5:59812800-59814400	Weak transcription	Primary B cells from cord blood	blood
13	chr5:59812800-59814600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr5:59812800-59816800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:59812800-59822400	Weak transcription	Brain Angular Gyrus	brain
16	chr5:59813000-59813200	Enhancers	Fetal Stomach	stomach
17	chr5:59813000-59813200	ZNF genes & repeats	GM12878-XiMat	blood
18	chr5:59813000-59814400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links