Variant report

Variant	rs7312352
Chromosome Location	chr12:63129713-63129714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63128547..63131269-chr12:63134912..63137198,2	K562	blood:
2	chr12:63129686..63132741-chr12:63143731..63146913,3	MCF-7	breast:
3	chr12:63124937..63127215-chr12:63127798..63129812,2	MCF-7	breast:
4	chr12:62996151..62998327-chr12:63129550..63131518,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199179	Chromatin interaction
ENSG00000221949	Chromatin interaction
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10877911	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.81[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174620	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs11174621	0.88[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11174626	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12315418	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7135080	0.81[CHB][hapmap]
rs7295577	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7308302	0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7954555	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7970056	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
2	chr12:63120000-63131600	Weak transcription	Thymus	Thymus
3	chr12:63121800-63133200	Strong transcription	HepG2	liver
4	chr12:63123000-63152000	Weak transcription	Gastric	stomach
5	chr12:63123200-63137400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr12:63123600-63131000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:63123600-63131600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:63123600-63132400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:63124200-63131600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr12:63124200-63131800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr12:63124200-63145400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr12:63124400-63131200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr12:63124400-63131600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:63124400-63131600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr12:63124600-63132000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr12:63125200-63132400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr12:63125400-63132200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr12:63125600-63138400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr12:63125800-63130000	Weak transcription	Fetal Brain Female	brain
20	chr12:63125800-63131800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr12:63125800-63132200	Weak transcription	Brain Substantia Nigra	brain
22	chr12:63125800-63133600	Weak transcription	Fetal Kidney	kidney
23	chr12:63125800-63143000	Weak transcription	Psoas Muscle	Psoas
24	chr12:63126000-63132000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr12:63126000-63132400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr12:63126000-63132800	Weak transcription	Brain Hippocampus Middle	brain
27	chr12:63126000-63133000	Weak transcription	Brain Anterior Caudate	brain
28	chr12:63126000-63133000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr12:63126000-63133600	Weak transcription	Adipose Nuclei	Adipose
30	chr12:63126000-63138400	Weak transcription	Left Ventricle	heart
31	chr12:63126000-63149200	Weak transcription	Lung	lung
32	chr12:63126200-63130200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr12:63126200-63131000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr12:63126200-63132400	Weak transcription	Ovary	ovary
35	chr12:63126200-63133000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr12:63126200-63133200	Weak transcription	Fetal Stomach	stomach
37	chr12:63126200-63133200	Weak transcription	Right Atrium	heart
38	chr12:63126200-63138600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr12:63126200-63155600	Weak transcription	Aorta	Aorta
40	chr12:63126400-63131200	Weak transcription	Fetal Muscle Leg	muscle
41	chr12:63126400-63132000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr12:63126400-63132000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr12:63126400-63133600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr12:63126800-63132200	Weak transcription	Brain Angular Gyrus	brain
45	chr12:63127000-63131600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr12:63127000-63131800	Weak transcription	Hela-S3	cervix
47	chr12:63127200-63130200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr12:63127200-63131600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr12:63127200-63131600	Weak transcription	HSMM	muscle
50	chr12:63127200-63131800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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