Variant report
| Variant | rs73128747 |
|---|---|
| Chromosome Location | chr12:67656176-67656177 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:67461930..67464015-chr12:67653908..67656790,2 | MCF-7 | breast: | |
| 2 | chr12:67655079..67657081-chr12:67663033..67665904,3 | K562 | blood: | |
| 3 | chr12:67645820..67647792-chr12:67656045..67658081,2 | K562 | blood: | |
| 4 | chr12:67655772..67657475-chr12:67658776..67661766,2 | K562 | blood: | |
| 5 | chr12:67655079..67657285-chr12:67662999..67665798,2 | K562 | blood: | |
| 6 | chr12:67647986..67651907-chr12:67654023..67659120,6 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GRIP1-8 | chr12:67656109-67663060 | NONHSAT029243 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111530 | Chromatin interaction |
| ENSG00000237766 | Chromatin interaction |
| ENSG00000256248 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs12815705 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12824549 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12825266 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12833866 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs56320762 | 1.00[AMR][1000 genomes] |
| rs61919016 | 1.00[AMR][1000 genomes] |
| rs61919041 | 1.00[AMR][1000 genomes] |
| rs67547277 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs67739703 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs67752507 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv541524 | chr12:67311057-67700349 | Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv559212 | chr12:67373549-67850925 | Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054111 | chr12:67556780-67865542 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 4 | esv3450703 | chr12:67651785-67656783 | Inactive region | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
