Variant report
| Variant | rs73129853 |
|---|---|
| Chromosome Location | chr1:225090495-225090496 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:224690531..224692939-chr1:225090121..225091739,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10915712 | 1.00[EUR][1000 genomes] |
| rs10915713 | 1.00[EUR][1000 genomes] |
| rs58883363 | 1.00[EUR][1000 genomes] |
| rs59263273 | 1.00[EUR][1000 genomes] |
| rs59279645 | 1.00[EUR][1000 genomes] |
| rs59777302 | 1.00[EUR][1000 genomes] |
| rs60002937 | 1.00[EUR][1000 genomes] |
| rs60489231 | 1.00[EUR][1000 genomes] |
| rs60846144 | 1.00[EUR][1000 genomes] |
| rs61564365 | 1.00[EUR][1000 genomes] |
| rs61745064 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6702972 | 1.00[EUR][1000 genomes] |
| rs73127901 | 1.00[EUR][1000 genomes] |
| rs73129810 | 1.00[EUR][1000 genomes] |
| rs73129812 | 1.00[EUR][1000 genomes] |
| rs73129837 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73129838 | 1.00[EUR][1000 genomes] |
| rs73129850 | 1.00[EUR][1000 genomes] |
| rs73129855 | 1.00[EUR][1000 genomes] |
| rs73129861 | 1.00[EUR][1000 genomes] |
| rs73129867 | 1.00[EUR][1000 genomes] |
| rs73129870 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73129894 | 1.00[EUR][1000 genomes] |
| rs73129898 | 1.00[EUR][1000 genomes] |
| rs73129900 | 1.00[EUR][1000 genomes] |
| rs73131704 | 1.00[EUR][1000 genomes] |
| rs73133542 | 1.00[EUR][1000 genomes] |
| rs73133544 | 1.00[EUR][1000 genomes] |
| rs73133554 | 1.00[EUR][1000 genomes] |
| rs73133577 | 1.00[EUR][1000 genomes] |
| rs73133578 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74146264 | 1.00[EUR][1000 genomes] |
| rs7522229 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7554589 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757773 | chr1:225087924-225253274 | Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv2759001 | chr1:225087924-225253274 | Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:225090000-225091400 | Weak transcription | Fetal Thymus | thymus |
