Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92671979..92673902-chr5:92694437..92696001,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10044190	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079491	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476518	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1157899	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11956893	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13355597	1.00[ASN][1000 genomes]
rs13360184	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1460748	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6875613	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6875617	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6891846	1.00[ASN][1000 genomes]
rs73131381	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73131390	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73131401	1.00[ASN][1000 genomes]
rs73133207	1.00[ASN][1000 genomes]
rs73133209	1.00[ASN][1000 genomes]
rs9314083	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314084	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688292	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92692200-92696800	Enhancers	HMEC	breast
2	chr5:92693600-92696000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:92693600-92696200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:92694600-92696000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:92695000-92696600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:92695000-92697000	Enhancers	HSMM	muscle
7	chr5:92695200-92696000	Flanking Active TSS	NHEK	skin
8	chr5:92695200-92696400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr5:92695400-92696000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:92695600-92696000	Flanking Active TSS	Hela-S3	cervix
11	chr5:92695600-92696000	Flanking Active TSS	HUVEC	blood vessel
12	chr5:92695600-92696000	Enhancers	NH-A	brain
13	chr5:92695600-92696800	Weak transcription	Fetal Brain Male	brain
14	chr5:92695800-92696400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:92695800-92696800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr5:92695800-92696800	Enhancers	Osteobl	bone

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