Variant report

Variant	rs73133542
Chromosome Location	chr1:225267301-225267302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs58883363	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59263273	1.00[EUR][1000 genomes]
rs59279645	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59777302	1.00[EUR][1000 genomes]
rs59930091	0.85[AFR][1000 genomes]
rs59935799	1.00[EUR][1000 genomes]
rs60002937	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60489231	1.00[EUR][1000 genomes]
rs61564365	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61745064	1.00[EUR][1000 genomes]
rs6681300	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129837	1.00[EUR][1000 genomes]
rs73129838	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129850	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129853	1.00[EUR][1000 genomes]
rs73129855	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129861	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129867	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129870	1.00[EUR][1000 genomes]
rs73129894	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129898	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129900	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73131704	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73133544	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73133554	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73133577	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73133578	1.00[EUR][1000 genomes]
rs73133591	1.00[EUR][1000 genomes]
rs73133599	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73133601	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73135010	1.00[EUR][1000 genomes]
rs73135013	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7522229	1.00[EUR][1000 genomes]
rs7554589	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9659564	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004856	chr1:225228287-225271137	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv526708	chr1:225229866-225273248	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv945671	chr1:225242969-225311101	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225256400-225277400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:225261200-225274800	Weak transcription	Ovary	ovary
3	chr1:225261200-225279200	Weak transcription	Pancreas	Pancrea
4	chr1:225261400-225274600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:225264200-225267600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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