Variant report

Variant	rs73133591
Chromosome Location	chr1:225319463-225319464
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs58883363	1.00[EUR][1000 genomes]
rs59263273	1.00[EUR][1000 genomes]
rs59279645	1.00[EUR][1000 genomes]
rs59930091	0.81[AFR][1000 genomes]
rs59935799	1.00[EUR][1000 genomes]
rs60002937	1.00[EUR][1000 genomes]
rs60489231	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61564365	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61732752	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61745064	1.00[EUR][1000 genomes]
rs6681300	1.00[EUR][1000 genomes]
rs6703803	1.00[EUR][1000 genomes]
rs73129861	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129867	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129870	1.00[EUR][1000 genomes]
rs73129894	1.00[EUR][1000 genomes]
rs73129898	1.00[EUR][1000 genomes]
rs73129900	1.00[EUR][1000 genomes]
rs73131704	1.00[EUR][1000 genomes]
rs73133542	1.00[EUR][1000 genomes]
rs73133544	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73133554	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73133577	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73133578	1.00[EUR][1000 genomes]
rs73133599	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73133601	1.00[EUR][1000 genomes]
rs73135010	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73135013	1.00[EUR][1000 genomes]
rs7415021	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522229	1.00[EUR][1000 genomes]
rs7554589	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9659564	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv524461	chr1:225304331-225347689	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv468205	chr1:225304971-225476025	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv549264	chr1:225304971-225476025	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225301800-225355800	Weak transcription	Pancreas	Pancrea

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