Variant report

Variant	rs73133601
Chromosome Location	chr1:225340079-225340080
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225339059..225340673-chr1:225341407..225343124,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs58883363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59263273	1.00[EUR][1000 genomes]
rs59279645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59935799	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60002937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60489231	1.00[EUR][1000 genomes]
rs61564365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61745064	1.00[EUR][1000 genomes]
rs6681300	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6703803	1.00[EUR][1000 genomes]
rs73129894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73131704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73133542	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73133544	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73133554	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73133577	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73133578	1.00[EUR][1000 genomes]
rs73133591	1.00[EUR][1000 genomes]
rs73133599	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73135010	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73135013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7554589	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9659564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv524461	chr1:225304331-225347689	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv468205	chr1:225304971-225476025	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv549264	chr1:225304971-225476025	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv945672	chr1:225339532-225561349	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225301800-225355800	Weak transcription	Pancreas	Pancrea
2	chr1:225322000-225356000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:225326400-225355800	Weak transcription	Ovary	ovary
4	chr1:225332800-225356000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:225334200-225343400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:225336600-225341600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:225338200-225355600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:225339000-225340400	Enhancers	HSMMtube	muscle
9	chr1:225339200-225340200	Enhancers	Fetal Muscle Leg	muscle

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