Variant report

Variant	rs73139644
Chromosome Location	chr3:81493463-81493464
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1350844	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17019070	0.85[AMR][1000 genomes]
rs1841596	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs275356	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6789701	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73139614	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73139617	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73139621	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73139622	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73139625	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73141705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73141717	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73141720	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81486800-81503200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:81491400-81497800	Enhancers	Osteobl	bone
3	chr3:81491800-81493800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:81491800-81494400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:81492000-81493800	Enhancers	Adipose Nuclei	Adipose
6	chr3:81492000-81494000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:81492000-81494600	Enhancers	NHDF-Ad	bronchial
8	chr3:81492000-81499600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:81492200-81493600	Enhancers	Ovary	ovary
10	chr3:81492200-81493600	Flanking Active TSS	A549	lung
11	chr3:81492200-81493800	Enhancers	HSMM	muscle
12	chr3:81492200-81493800	Enhancers	NHEK	skin
13	chr3:81492400-81493800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:81492400-81493800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:81492400-81493800	Enhancers	HMEC	breast
16	chr3:81492600-81493600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:81492800-81493600	Enhancers	NH-A	brain
18	chr3:81492800-81500400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:81493000-81493800	Enhancers	NHLF	lung
20	chr3:81493200-81493600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr3:81493200-81493800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:81493400-81493600	Enhancers	Aorta	Aorta
23	chr3:81493400-81493800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:81493400-81493800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:81493400-81494400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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