Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17082555	1.00[EUR][1000 genomes]
rs56715581	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59258692	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59369031	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60126216	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61675340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6557060	1.00[EUR][1000 genomes]
rs6898957	1.00[EUR][1000 genomes]
rs73140852	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73140856	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73140858	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73140859	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73140863	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73140864	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73140868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73140899	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73142806	0.96[AFR][1000 genomes]
rs73142810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73142812	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73142816	0.90[AFR][1000 genomes]
rs73142822	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144863	1.00[EUR][1000 genomes]
rs7736450	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830398	chr5:92102826-92281331	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92212400-92215000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:92214600-92223200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:92214600-92223400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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