Variant report

Variant	rs73141720
Chromosome Location	chr3:81498300-81498301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1350844	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17019070	0.85[AMR][1000 genomes]
rs1841596	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs275356	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6789701	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73139614	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73139617	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73139621	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73139622	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73139625	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73139644	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73141705	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73141717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81486800-81503200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:81492000-81499600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:81492800-81500400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:81493600-81503000	Weak transcription	Aorta	Aorta
5	chr3:81495000-81500800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:81495600-81499600	Enhancers	Adipose Nuclei	Adipose
7	chr3:81496800-81500200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:81497200-81500400	Weak transcription	Fetal Heart	heart
9	chr3:81497600-81498400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:81497600-81498400	Weak transcription	NHDF-Ad	bronchial
11	chr3:81497600-81498800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:81497800-81500000	Weak transcription	Osteobl	bone
13	chr3:81498200-81498600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:81498200-81501600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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