Variant report

Variant	rs73143829
Chromosome Location	chr5:97750534-97750535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11959445	0.88[AFR][1000 genomes]
rs17165940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4018612	0.83[AMR][1000 genomes]
rs59053313	0.91[AFR][1000 genomes]
rs73143820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143830	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73159246	0.83[AMR][1000 genomes]
rs73159269	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv969967	chr5:97744486-97756918	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
6	nsv968966	chr5:97745646-97751814	Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97744200-97755200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97748400-97754200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:97748600-97754400	Enhancers	NHDF-Ad	bronchial
4	chr5:97748800-97752000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:97748800-97753200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:97748800-97753200	Enhancers	HSMM	muscle
7	chr5:97749200-97752800	Enhancers	HSMMtube	muscle
8	chr5:97749200-97752800	Enhancers	NHLF	lung
9	chr5:97749200-97753000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:97749200-97753400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:97749600-97752000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:97749600-97752000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:97749600-97753200	Enhancers	Osteobl	bone
14	chr5:97749800-97751200	Enhancers	NHEK	skin
15	chr5:97749800-97752200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:97749800-97752800	Enhancers	NH-A	brain
17	chr5:97749800-97753400	Enhancers	HMEC	breast
18	chr5:97750000-97753200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:97750400-97753400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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