Variant report

Variant	rs73143862
Chromosome Location	chr5:97760758-97760759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1455421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2124262	1.00[AMR][1000 genomes]
rs57186366	1.00[AMR][1000 genomes]
rs57817463	1.00[AMR][1000 genomes]
rs6898848	1.00[AMR][1000 genomes]
rs73143803	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143804	1.00[AMR][1000 genomes]
rs73143839	1.00[AMR][1000 genomes]
rs73143842	1.00[AMR][1000 genomes]
rs73143845	1.00[AMR][1000 genomes]
rs73143847	1.00[AMR][1000 genomes]
rs73143853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143866	1.00[AMR][1000 genomes]
rs73143879	1.00[AMR][1000 genomes]
rs73159206	1.00[AMR][1000 genomes]
rs73159235	1.00[AMR][1000 genomes]
rs73159240	1.00[AMR][1000 genomes]
rs73159247	1.00[AMR][1000 genomes]
rs73159254	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97755200-97763800	Weak transcription	Small Intestine	intestine
2	chr5:97755200-97764400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:97755800-97761800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:97760000-97760800	Enhancers	NHLF	lung
5	chr5:97760000-97762000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:97760000-97762000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:97760200-97761600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:97760200-97761600	Enhancers	HSMM	muscle
9	chr5:97760200-97761800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:97760200-97761800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:97760200-97762600	Enhancers	Fetal Stomach	stomach
12	chr5:97760400-97760800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:97760400-97762400	Enhancers	Colon Smooth Muscle	Colon
14	chr5:97760600-97761000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:97760600-97761000	Active TSS	NHDF-Ad	bronchial
16	chr5:97760600-97761600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr5:97760600-97761800	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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