Variant report

Variant	rs73144053
Chromosome Location	chr3:88085826-88085827
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:88083923..88086770-chr3:88102079..88103934,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10511136	0.82[ASN][1000 genomes]
rs11128018	0.82[ASN][1000 genomes]
rs11128019	0.82[ASN][1000 genomes]
rs11717413	0.82[ASN][1000 genomes]
rs11915058	0.82[ASN][1000 genomes]
rs17025236	0.83[EUR][1000 genomes]
rs17025241	0.83[EUR][1000 genomes]
rs17549213	0.82[ASN][1000 genomes]
rs17549345	0.82[ASN][1000 genomes]
rs2082226	0.83[EUR][1000 genomes]
rs2344185	0.83[ASN][1000 genomes]
rs55644022	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55771815	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55840331	0.82[ASN][1000 genomes]
rs56006017	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56173847	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56323967	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58658187	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60099577	0.82[ASN][1000 genomes]
rs67047416	0.82[ASN][1000 genomes]
rs67566069	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6785333	0.85[ASN][1000 genomes]
rs6787253	0.83[EUR][1000 genomes]
rs6798161	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs68042814	0.82[ASN][1000 genomes]
rs6804848	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs68068970	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73140133	0.83[EUR][1000 genomes]
rs73140134	0.82[EUR][1000 genomes]
rs7637503	0.82[ASN][1000 genomes]
rs9681975	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9852704	0.83[ASN][1000 genomes]
rs9859034	0.83[ASN][1000 genomes]
rs9880480	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv536635	chr3:88049304-88088520	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv525814	chr3:88085633-88091543	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88081600-88086800	Weak transcription	Psoas Muscle	Psoas
2	chr3:88081800-88087000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:88081800-88087000	Weak transcription	NHEK	skin
4	chr3:88081800-88091200	Weak transcription	Right Atrium	heart
5	chr3:88082200-88086600	Weak transcription	NHDF-Ad	bronchial
6	chr3:88082400-88087800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:88084000-88086200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:88084000-88086600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:88084000-88086600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:88084000-88086800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:88085200-88089000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:88085400-88088000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:88085600-88087000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links