Variant report

Variant	rs73144148
Chromosome Location	chr3:22412704-22412705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1389658	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17011233	1.00[AMR][1000 genomes]
rs17011245	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs67095441	0.84[AFR][1000 genomes]
rs67227208	0.84[AFR][1000 genomes]
rs73140289	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73142203	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73142210	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73142213	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003085	chr3:21887971-22415107	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv432404	chr3:22000296-22433396	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1003211	chr3:22244883-22584229	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv536520	chr3:22244883-22584229	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv428082	chr3:22397625-22539817	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22410400-22415200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr3:22412200-22413400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:22412200-22415000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:22412400-22415000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:22412600-22412800	Flanking Bivalent TSS/Enh	Fetal Lung	lung
6	chr3:22412600-22413200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr3:22412600-22413200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr3:22412600-22413200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr3:22412600-22413400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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