Variant report

Variant	rs73144863
Chromosome Location	chr5:92352111-92352112
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56715581	1.00[EUR][1000 genomes]
rs59258692	1.00[EUR][1000 genomes]
rs59369031	1.00[EUR][1000 genomes]
rs60126216	1.00[EUR][1000 genomes]
rs61675340	1.00[EUR][1000 genomes]
rs6557060	1.00[EUR][1000 genomes]
rs73140852	1.00[EUR][1000 genomes]
rs73140856	1.00[EUR][1000 genomes]
rs73140858	1.00[EUR][1000 genomes]
rs73140859	1.00[EUR][1000 genomes]
rs73140863	1.00[EUR][1000 genomes]
rs73140864	1.00[EUR][1000 genomes]
rs73140868	1.00[EUR][1000 genomes]
rs73140899	1.00[EUR][1000 genomes]
rs73140901	1.00[EUR][1000 genomes]
rs73142810	1.00[EUR][1000 genomes]
rs73142812	1.00[EUR][1000 genomes]
rs73142822	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92345000-92357200	Weak transcription	Fetal Kidney	kidney
2	chr5:92347800-92352600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:92348000-92354800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:92348000-92354800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:92348200-92354400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:92351400-92352400	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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