Variant report

Variant	rs73145774
Chromosome Location	chr5:97853938-97853939
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73145777	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97846000-97857600	Weak transcription	Pancreas	Pancrea
2	chr5:97846000-97859000	Weak transcription	Gastric	stomach
3	chr5:97850600-97855400	Weak transcription	HSMM	muscle
4	chr5:97852600-97854400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr5:97852600-97854600	Enhancers	Duodenum Mucosa	Duodenum
6	chr5:97852800-97857000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:97853200-97854000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:97853200-97854400	Enhancers	Fetal Intestine Large	intestine
9	chr5:97853200-97855600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:97853200-97855800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:97853400-97854000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:97853400-97854000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr5:97853400-97854200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:97853400-97854200	Enhancers	Brain Hippocampus Middle	brain
15	chr5:97853400-97854400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:97853400-97854400	Enhancers	Small Intestine	intestine
17	chr5:97853400-97854600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:97853400-97854800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr5:97853400-97855000	Enhancers	Fetal Intestine Small	intestine
20	chr5:97853600-97854000	Enhancers	H9 Cell Line	embryonic stem cell
21	chr5:97853600-97854000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:97853600-97854000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:97853600-97854000	Enhancers	Brain Germinal Matrix	brain
24	chr5:97853600-97854000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr5:97853600-97854000	Enhancers	NHDF-Ad	bronchial
26	chr5:97853600-97854200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr5:97853600-97854200	Enhancers	Brain Cingulate Gyrus	brain
28	chr5:97853600-97854200	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr5:97853600-97854400	Enhancers	Colonic Mucosa	Colon
30	chr5:97853600-97854400	Enhancers	Stomach Mucosa	stomach
31	chr5:97853800-97854000	Flanking Active TSS	Brain Anterior Caudate	brain
32	chr5:97853800-97854200	Active TSS	Brain Substantia Nigra	brain
33	chr5:97853800-97855400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr5:97853800-97856600	Weak transcription	Fetal Muscle Leg	muscle

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