Variant report

Variant	rs73145777
Chromosome Location	chr5:97859212-97859213
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58604881	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145767	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145770	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145774	0.86[AFR][1000 genomes]
rs73145792	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145796	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145802	1.00[AMR][1000 genomes]
rs73147715	1.00[AMR][1000 genomes]
rs73147717	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97854200-97859400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97854400-97859400	Weak transcription	Stomach Mucosa	stomach
3	chr5:97855600-97863400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:97857000-97860400	Weak transcription	Fetal Muscle Leg	muscle
5	chr5:97859000-97859600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:97859000-97859800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:97859000-97859800	Enhancers	NHDF-Ad	bronchial
8	chr5:97859200-97862600	Weak transcription	Fetal Intestine Large	intestine
9	chr5:97859200-97862800	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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