Variant report
| Variant | rs73149257 |
|---|---|
| Chromosome Location | chr3:25274694-25274695 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:25273667..25275678-chr3:25276657..25278966,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs57138445 | 1.00[AMR][1000 genomes] |
| rs59791229 | 1.00[AMR][1000 genomes] |
| rs61241444 | 1.00[AMR][1000 genomes] |
| rs61283832 | 1.00[AMR][1000 genomes] |
| rs6764236 | 1.00[AMR][1000 genomes] |
| rs73149207 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149208 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149210 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149213 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149216 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149217 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149220 | 1.00[AMR][1000 genomes] |
| rs73149222 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149242 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149244 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149249 | 1.00[AMR][1000 genomes] |
| rs73149259 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149271 | 1.00[AMR][1000 genomes] |
| rs73149287 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73151261 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73151262 | 1.00[AMR][1000 genomes] |
| rs73151281 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73151287 | 1.00[AMR][1000 genomes] |
| rs73151288 | 1.00[AMR][1000 genomes] |
| rs73151291 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73154981 | 1.00[AMR][1000 genomes] |
| rs73156065 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949035 | chr3:25194301-26084890 | Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 68 gene(s) | inside rSNPs | diseases |
| 2 | nsv508213 | chr3:25206150-25326196 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:25270400-25276600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr3:25273400-25276200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
