Variant report
| Variant | rs73149585 |
|---|---|
| Chromosome Location | chr5:98038742-98038743 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:98034269..98036713-chr5:98038711..98041425,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10041609 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10062576 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10063587 | 0.86[AFR][1000 genomes] |
| rs10077523 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10479227 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10479228 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10479229 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10479244 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13357377 | 0.86[AFR][1000 genomes] |
| rs28872549 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55827362 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57794132 | 0.86[AFR][1000 genomes] |
| rs58603373 | 0.86[AFR][1000 genomes] |
| rs60606949 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149523 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149536 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149563 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73149569 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9327876 | 0.86[AFR][1000 genomes] |
| rs9632473 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029509 | chr5:97888644-98040172 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032060 | chr5:98022226-98093492 | Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv537817 | chr5:98022226-98093492 | Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:98026000-98040000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
