Variant report

Variant	rs73149654
Chromosome Location	chr3:23262976-23262977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17013009	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17013099	1.00[AMR][1000 genomes]
rs28548892	1.00[AMR][1000 genomes]
rs28641973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57747253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58879825	1.00[AMR][1000 genomes]
rs61636332	1.00[AMR][1000 genomes]
rs6768277	1.00[AMR][1000 genomes]
rs6795043	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138415	1.00[AMR][1000 genomes]
rs73138434	1.00[AMR][1000 genomes]
rs73138436	1.00[AMR][1000 genomes]
rs73149686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634565	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7646028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7652287	1.00[AMR][1000 genomes]
rs9310716	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9681506	1.00[AMR][1000 genomes]
rs9809364	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9810378	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9811442	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9819566	1.00[AMR][1000 genomes]
rs9819788	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9821681	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9829577	1.00[AMR][1000 genomes]
rs9834737	1.00[AMR][1000 genomes]
rs9842159	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9845340	1.00[AMR][1000 genomes]
rs9861614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9866889	1.00[AMR][1000 genomes]
rs9878638	1.00[AMR][1000 genomes]
rs9879217	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23246200-23264200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:23246400-23273400	Weak transcription	Aorta	Aorta
3	chr3:23248800-23265800	Weak transcription	Primary T cells from cord blood	blood
4	chr3:23249000-23273400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:23257000-23263200	Enhancers	Brain Hippocampus Middle	brain
6	chr3:23260800-23270400	Weak transcription	Psoas Muscle	Psoas
7	chr3:23260800-23273400	Weak transcription	Right Atrium	heart
8	chr3:23261000-23273400	Weak transcription	Ovary	ovary
9	chr3:23261000-23274400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:23261200-23264800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:23261200-23272600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:23261400-23278200	Weak transcription	Brain Angular Gyrus	brain
13	chr3:23261600-23264400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:23262000-23263400	Flanking Active TSS	GM12878-XiMat	blood
15	chr3:23262200-23263200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:23262400-23263200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:23262600-23263000	Active TSS	Primary B cells from peripheral blood	blood
18	chr3:23262600-23263000	Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr3:23262600-23263400	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr3:23262600-23263400	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr3:23262600-23263400	Active TSS	Monocytes-CD14+_RO01746	blood
22	chr3:23262600-23268000	Weak transcription	Thymus	Thymus
23	chr3:23262800-23263200	Active TSS	Primary monocytes fromperipheralblood	blood
24	chr3:23262800-23263200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:23262800-23263400	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr3:23262800-23263400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:23262800-23263400	Active TSS	Adipose Nuclei	Adipose

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