Variant report

Variant	rs73151262
Chromosome Location	chr3:25294054-25294055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs57138445	1.00[AMR][1000 genomes]
rs59791229	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61241444	1.00[AMR][1000 genomes]
rs61283832	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6764236	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143482	0.92[AFR][1000 genomes]
rs73145395	0.85[AFR][1000 genomes]
rs73149207	1.00[AMR][1000 genomes]
rs73149208	1.00[AMR][1000 genomes]
rs73149210	1.00[AMR][1000 genomes]
rs73149213	1.00[AMR][1000 genomes]
rs73149216	1.00[AMR][1000 genomes]
rs73149217	1.00[AMR][1000 genomes]
rs73149220	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149222	1.00[AMR][1000 genomes]
rs73149242	1.00[AMR][1000 genomes]
rs73149244	1.00[AMR][1000 genomes]
rs73149249	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149257	1.00[AMR][1000 genomes]
rs73149259	1.00[AMR][1000 genomes]
rs73149271	1.00[AMR][1000 genomes]
rs73149287	1.00[AMR][1000 genomes]
rs73151261	1.00[AMR][1000 genomes]
rs73151281	1.00[AMR][1000 genomes]
rs73151287	1.00[AMR][1000 genomes]
rs73151288	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151291	1.00[AMR][1000 genomes]
rs73154981	1.00[AMR][1000 genomes]
rs73156065	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv508213	chr3:25206150-25326196	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1012646	chr3:25277328-25322125	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1006455	chr3:25277328-25327235	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25292200-25308200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:25293000-25308400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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