Variant report

Variant	rs73151281
Chromosome Location	chr3:25298465-25298466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs57138445	1.00[AMR][1000 genomes]
rs59791229	1.00[AMR][1000 genomes]
rs61241444	1.00[AMR][1000 genomes]
rs61283832	1.00[AMR][1000 genomes]
rs6764236	1.00[AMR][1000 genomes]
rs73149207	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149208	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149210	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149213	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149216	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149217	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149220	1.00[AMR][1000 genomes]
rs73149222	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149242	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149244	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149249	1.00[AMR][1000 genomes]
rs73149257	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149259	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149271	1.00[AMR][1000 genomes]
rs73149287	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151261	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151262	1.00[AMR][1000 genomes]
rs73151287	1.00[AMR][1000 genomes]
rs73151288	1.00[AMR][1000 genomes]
rs73151291	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73154981	1.00[AMR][1000 genomes]
rs73156065	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv508213	chr3:25206150-25326196	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1012646	chr3:25277328-25322125	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1006455	chr3:25277328-25327235	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25292200-25308200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:25293000-25308400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:25298400-25299000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:25298400-25299400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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