Variant report

Variant	rs73151464
Chromosome Location	chr5:98123105-98123106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:98113211..98117452-chr5:98120749..98124460,5	MCF-7	breast:
2	chr5:98123018..98126275-chr5:98130087..98132367,4	MCF-7	breast:
3	chr5:98122991..98125180-chr5:98125864..98127649,2	MCF-7	breast:
4	chr5:98122831..98123704-chr5:98131769..98132290,2	MCF-7	breast:
5	chr5:98105419..98111417-chr5:98120321..98126739,11	MCF-7	breast:
6	chr5:98121084..98123480-chr5:98124476..98127082,2	K562	blood:
7	chr5:98107013..98112208-chr5:98121949..98125778,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174136	Chromatin interaction
ENSG00000246763	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11954623	1.00[AMR][1000 genomes]
rs11957518	1.00[AMR][1000 genomes]
rs1508794	1.00[AMR][1000 genomes]
rs1508795	1.00[AMR][1000 genomes]
rs17166354	1.00[AMR][1000 genomes]
rs17166367	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166368	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2035229	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036691	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3952932	1.00[AMR][1000 genomes]
rs55660533	1.00[AMR][1000 genomes]
rs57293752	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58710516	1.00[AMR][1000 genomes]
rs6890688	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6895731	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151405	1.00[AMR][1000 genomes]
rs73151407	1.00[AMR][1000 genomes]
rs73151426	1.00[AMR][1000 genomes]
rs73151428	1.00[AMR][1000 genomes]
rs73151441	1.00[AMR][1000 genomes]
rs73151444	1.00[AMR][1000 genomes]
rs73151454	1.00[AMR][1000 genomes]
rs73151459	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151463	1.00[AMR][1000 genomes]
rs73151473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73153510	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7707936	1.00[AMR][1000 genomes]
rs906681	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98110200-98125200	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
2	chr5:98110800-98123200	Weak transcription	Aorta	Aorta
3	chr5:98111000-98128800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:98111000-98131800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr5:98111600-98131800	Weak transcription	Placenta	Placenta
6	chr5:98112000-98135800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr5:98114800-98131400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr5:98115000-98125400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:98115600-98123200	Weak transcription	Primary T cells from cord blood	blood
10	chr5:98115800-98123200	Weak transcription	Right Atrium	heart
11	chr5:98115800-98123800	Genic enhancers	NHEK	skin
12	chr5:98116600-98125200	Genic enhancers	Osteobl	bone
13	chr5:98116800-98123200	Weak transcription	HepG2	liver
14	chr5:98116800-98127600	Weak transcription	Hela-S3	cervix
15	chr5:98117000-98128600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr5:98117600-98132200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr5:98117800-98125000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:98117800-98125200	Genic enhancers	Fetal Muscle Leg	muscle
19	chr5:98117800-98125600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr5:98117800-98128000	Genic enhancers	HSMM	muscle
21	chr5:98118200-98123800	Enhancers	Brain Substantia Nigra	brain
22	chr5:98118400-98123400	Enhancers	Brain Hippocampus Middle	brain
23	chr5:98118400-98131800	Weak transcription	A549	lung
24	chr5:98118600-98123400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
25	chr5:98118600-98124400	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr5:98118800-98123400	Enhancers	Brain Angular Gyrus	brain
27	chr5:98118800-98123600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:98119000-98126000	Enhancers	Colon Smooth Muscle	Colon
29	chr5:98119200-98128800	Weak transcription	Spleen	Spleen
30	chr5:98119200-98129000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr5:98119800-98123800	Enhancers	Colonic Mucosa	Colon
32	chr5:98120000-98124600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr5:98120000-98125000	Enhancers	Small Intestine	intestine
34	chr5:98120200-98123400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:98120200-98124000	Enhancers	Brain Anterior Caudate	brain
36	chr5:98120200-98124000	Genic enhancers	HSMMtube	muscle
37	chr5:98120200-98124400	Enhancers	Psoas Muscle	Psoas
38	chr5:98120200-98126200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr5:98120400-98123200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr5:98120400-98123200	Enhancers	Brain Germinal Matrix	brain
41	chr5:98120600-98123200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr5:98120600-98124000	Enhancers	Stomach Mucosa	stomach
43	chr5:98120800-98123200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr5:98120800-98123400	Enhancers	Fetal Brain Male	brain
45	chr5:98120800-98123400	Genic enhancers	Fetal Intestine Small	intestine
46	chr5:98120800-98127200	Enhancers	Duodenum Mucosa	Duodenum
47	chr5:98121000-98123400	Enhancers	Pancreas	Pancrea
48	chr5:98121000-98123800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr5:98121000-98127200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr5:98121200-98123200	Enhancers	Fetal Lung	lung

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