Variant report

Variant	rs73154727
Chromosome Location	chr3:143469814-143469815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17591646	0.84[AMR][1000 genomes]
rs17591660	0.84[AMR][1000 genomes]
rs17651016	0.84[AMR][1000 genomes]
rs17651124	0.84[AMR][1000 genomes]
rs17651150	0.80[AMR][1000 genomes]
rs17651169	0.84[AMR][1000 genomes]
rs57468639	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58936162	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67534321	0.97[EUR][1000 genomes]
rs73154705	0.84[AMR][1000 genomes]
rs73154706	0.84[AMR][1000 genomes]
rs73154708	0.84[AMR][1000 genomes]
rs73154709	0.84[AMR][1000 genomes]
rs73154710	0.84[AMR][1000 genomes]
rs73154712	0.84[AMR][1000 genomes]
rs73154713	0.84[AMR][1000 genomes]
rs73154715	0.84[AMR][1000 genomes]
rs73154716	0.84[AMR][1000 genomes]
rs73154717	0.84[AMR][1000 genomes]
rs73154718	0.84[AMR][1000 genomes]
rs73154721	0.84[AMR][1000 genomes]
rs73154722	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv877567	chr3:143438124-143478454	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143394200-143470200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:143442200-143470200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:143450800-143488600	Weak transcription	Ovary	ovary
4	chr3:143457200-143488600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:143458000-143494400	Weak transcription	Psoas Muscle	Psoas
6	chr3:143465000-143490600	Weak transcription	Esophagus	oesophagus
7	chr3:143468400-143470400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr3:143468400-143470400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:143468800-143474400	Enhancers	Fetal Lung	lung
10	chr3:143469000-143470600	Enhancers	Primary T cells from cord blood	blood
11	chr3:143469000-143470600	Enhancers	Brain Angular Gyrus	brain
12	chr3:143469000-143470800	Enhancers	Brain Cingulate Gyrus	brain
13	chr3:143469000-143471800	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:143469200-143471000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:143469200-143472400	Enhancers	Brain Substantia Nigra	brain
16	chr3:143469400-143470600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr3:143469800-143470000	Enhancers	Right Atrium	heart
18	chr3:143469800-143470000	Enhancers	Dnd41	blood
19	chr3:143469800-143470200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr3:143469800-143470200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr3:143469800-143470400	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr3:143469800-143470400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr3:143469800-143470600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:143469800-143470600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:143469800-143470600	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr3:143469800-143470800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr3:143469800-143471200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr3:143469800-143472600	Enhancers	Brain Anterior Caudate	brain
29	chr3:143469800-143473600	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links