Variant report

Variant	rs73154825
Chromosome Location	chr3:162758492-162758493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:162754967..162757825-chr3:162758379..162760616,2	MCF-7	breast:

Extended variants
information (count: 163 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs12629139	0.93[EUR][1000 genomes]
rs12630065	0.96[EUR][1000 genomes]
rs12630082	0.96[EUR][1000 genomes]
rs12630083	0.96[EUR][1000 genomes]
rs12631833	0.93[EUR][1000 genomes]
rs12631981	0.96[EUR][1000 genomes]
rs12632042	0.96[EUR][1000 genomes]
rs12632054	0.96[EUR][1000 genomes]
rs12632154	0.96[EUR][1000 genomes]
rs12632433	0.96[EUR][1000 genomes]
rs12633462	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12633586	1.00[EUR][1000 genomes]
rs12634402	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12636307	0.96[EUR][1000 genomes]
rs12636611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637368	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12637489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637911	0.96[EUR][1000 genomes]
rs12638645	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1488186	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16847388	0.96[EUR][1000 genomes]
rs16854616	0.96[EUR][1000 genomes]
rs16854651	0.96[EUR][1000 genomes]
rs16854682	0.96[EUR][1000 genomes]
rs16854737	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16854780	0.96[EUR][1000 genomes]
rs16854830	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1844080	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2129836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34028622	0.90[EUR][1000 genomes]
rs34293607	0.96[EUR][1000 genomes]
rs35990141	0.96[EUR][1000 genomes]
rs3853168	0.96[EUR][1000 genomes]
rs3853170	0.96[EUR][1000 genomes]
rs56155538	0.96[EUR][1000 genomes]
rs56905693	0.96[EUR][1000 genomes]
rs57541426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57632819	0.90[EUR][1000 genomes]
rs57693311	0.96[EUR][1000 genomes]
rs58171652	0.96[EUR][1000 genomes]
rs58681440	0.96[EUR][1000 genomes]
rs59017390	0.96[EUR][1000 genomes]
rs59164820	0.96[EUR][1000 genomes]
rs59825045	0.96[EUR][1000 genomes]
rs59830210	0.96[EUR][1000 genomes]
rs59929531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60129151	0.96[EUR][1000 genomes]
rs60605423	0.96[EUR][1000 genomes]
rs60784369	0.96[EUR][1000 genomes]
rs60823164	0.96[EUR][1000 genomes]
rs60843889	0.96[EUR][1000 genomes]
rs60951341	0.96[EUR][1000 genomes]
rs61283411	0.96[EUR][1000 genomes]
rs66515733	0.96[EUR][1000 genomes]
rs66529141	0.96[EUR][1000 genomes]
rs66531018	0.96[EUR][1000 genomes]
rs66534967	0.96[EUR][1000 genomes]
rs66620503	0.96[EUR][1000 genomes]
rs66676234	0.96[EUR][1000 genomes]
rs66793835	0.96[EUR][1000 genomes]
rs66849163	0.96[EUR][1000 genomes]
rs66929427	0.96[EUR][1000 genomes]
rs66955449	0.93[EUR][1000 genomes]
rs67144490	0.96[EUR][1000 genomes]
rs67248547	0.96[EUR][1000 genomes]
rs67267202	0.96[EUR][1000 genomes]
rs67317870	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67399505	0.96[EUR][1000 genomes]
rs67406333	0.96[EUR][1000 genomes]
rs67493252	0.96[EUR][1000 genomes]
rs67516390	0.96[EUR][1000 genomes]
rs67519214	0.96[EUR][1000 genomes]
rs6762633	0.96[EUR][1000 genomes]
rs6763455	0.96[EUR][1000 genomes]
rs67734003	0.96[EUR][1000 genomes]
rs6777496	0.96[EUR][1000 genomes]
rs6777613	0.96[EUR][1000 genomes]
rs6783892	0.96[EUR][1000 genomes]
rs6784037	0.96[EUR][1000 genomes]
rs67847616	1.00[EUR][1000 genomes]
rs6785533	0.96[EUR][1000 genomes]
rs6785683	0.96[EUR][1000 genomes]
rs6785860	0.96[EUR][1000 genomes]
rs6786203	0.96[EUR][1000 genomes]
rs6788073	0.96[EUR][1000 genomes]
rs6788364	0.96[EUR][1000 genomes]
rs6788469	0.96[EUR][1000 genomes]
rs6789411	0.96[EUR][1000 genomes]
rs67895998	0.96[EUR][1000 genomes]
rs6791255	0.96[EUR][1000 genomes]
rs67960907	0.96[EUR][1000 genomes]
rs6797599	0.96[EUR][1000 genomes]
rs6799569	0.96[EUR][1000 genomes]
rs6801904	0.96[EUR][1000 genomes]
rs68081807	0.96[EUR][1000 genomes]
rs6809351	0.96[EUR][1000 genomes]
rs68161621	0.96[EUR][1000 genomes]
rs73019601	0.93[EUR][1000 genomes]
rs73021303	0.96[EUR][1000 genomes]
rs73021319	0.96[EUR][1000 genomes]
rs73021348	0.87[EUR][1000 genomes]
rs73021358	1.00[EUR][1000 genomes]
rs73021360	1.00[EUR][1000 genomes]
rs73021363	1.00[EUR][1000 genomes]
rs73023183	0.96[EUR][1000 genomes]
rs73023185	0.96[EUR][1000 genomes]
rs73154861	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73156258	0.82[AMR][1000 genomes]
rs73156265	0.82[AMR][1000 genomes]
rs73167695	0.96[EUR][1000 genomes]
rs73167696	0.96[EUR][1000 genomes]
rs73169619	0.96[EUR][1000 genomes]
rs73169622	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73169623	0.96[EUR][1000 genomes]
rs73169635	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73169647	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73171818	0.96[EUR][1000 genomes]
rs7614745	0.96[EUR][1000 genomes]
rs7616885	0.93[EUR][1000 genomes]
rs7624280	0.96[EUR][1000 genomes]
rs7638886	0.96[EUR][1000 genomes]
rs7645155	0.96[EUR][1000 genomes]
rs7648005	0.96[EUR][1000 genomes]
rs7648915	0.93[EUR][1000 genomes]
rs7652357	0.96[EUR][1000 genomes]
rs7653615	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428424	chr3:162145988-163033943	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv592201	chr3:162188625-163142162	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv470994	chr3:162217993-162945834	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv869804	chr3:162414099-162776884	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv869992	chr3:162483397-162776884	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv870318	chr3:162494699-162819441	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv592250	chr3:162512683-162768964	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1000858	chr3:162545705-162894644	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv877779	chr3:162618885-162932624	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv877780	chr3:162618885-162935109	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1006015	chr3:162626560-163159978	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv877782	chr3:162664345-162918387	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv877787	chr3:162678550-162809107	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv877791	chr3:162682825-163267267	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv1012835	chr3:162695903-163091909	Enhancers ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv1009186	chr3:162703393-162900102	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv1011196	chr3:162703918-162894644	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv536785	chr3:162703918-162894644	Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv592355	chr3:162704823-162768964	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv1797297	chr3:162718988-162767877	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv1804109	chr3:162718988-162767877	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv592366	chr3:162718988-162768964	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv592376	chr3:162719101-162768964	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv1792809	chr3:162721663-162828311	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
25	esv1793868	chr3:162721663-162828311	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
26	nsv592395	chr3:162724416-162764633	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv1014992	chr3:162726147-162900102	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
28	nsv1011771	chr3:162726432-162900102	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
29	nsv515724	chr3:162727247-162886458	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
30	esv1792126	chr3:162733793-162809307	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
31	esv1802921	chr3:162733793-162809307	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
32	esv1840612	chr3:162733793-162809307	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
33	nsv460958	chr3:162741452-162879873	Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
34	nsv460959	chr3:162741452-162879873	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
35	nsv592396	chr3:162741452-162879873	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
36	nsv592397	chr3:162755783-162768964	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv3343120	chr3:162756799-162788139	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162741000-162765600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links