Variant report

Variant	rs73155487
Chromosome Location	chr5:98331513-98331514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98286475..98288503-chr5:98329447..98332320,2	MCF-7	breast:
2	chr5:98264191..98266799-chr5:98330769..98334496,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248489	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs17166397	1.00[AMR][1000 genomes]
rs17166527	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166529	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166530	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166548	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166551	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166576	1.00[AMR][1000 genomes]
rs17166582	1.00[AMR][1000 genomes]
rs55842563	1.00[AMR][1000 genomes]
rs55918054	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56037221	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56301306	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56367612	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56380839	1.00[AMR][1000 genomes]
rs56393810	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57883072	1.00[AMR][1000 genomes]
rs58634056	1.00[AMR][1000 genomes]
rs59602127	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60347076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60955929	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6863847	1.00[AMR][1000 genomes]
rs6890801	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6890810	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73155495	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73155497	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73155499	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157406	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157408	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157409	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157411	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157413	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157414	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157416	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157417	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157423	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73157487	0.95[AFR][1000 genomes]
rs73157490	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7701147	0.94[AFR][1000 genomes]
rs7705736	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711225	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7717482	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7717655	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7724760	1.00[AMR][1000 genomes]
rs7726071	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727357	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727987	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728879	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826071	chr5:98312447-98358852	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1827754	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1837772	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1838335	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845131	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv4930	chr5:98318768-98350644	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98326200-98331600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:98329000-98331800	Enhancers	Stomach Mucosa	stomach
3	chr5:98329800-98332600	Weak transcription	Placenta	Placenta
4	chr5:98330800-98333000	Weak transcription	HepG2	liver

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