Variant report

Variant	rs73155600
Chromosome Location	chr4:56915061-56915062
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56914879..56917642-chr4:56927334..56929102,2	MCF-7	breast:
2	chr4:56732780..56733548-chr4:56914397..56915335,2	K562	blood:
3	chr4:56914423..56917343-chr4:56954991..56956586,2	MCF-7	breast:
4	chr4:56902751..56905676-chr4:56913962..56916198,3	MCF-7	breast:
5	chr4:56912197..56914161-chr4:56914438..56916191,2	MCF-7	breast:
6	chr4:56814506..56815307-chr4:56914802..56915691,3	K562	blood:
7	chr4:56910116..56913071-chr4:56914589..56916091,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174799	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10517367	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11938852	0.93[ASN][1000 genomes]
rs13112752	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17086249	0.91[ASN][1000 genomes]
rs2412720	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2412721	0.91[ASN][1000 genomes]
rs2412722	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2412725	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2412726	0.93[ASN][1000 genomes]
rs2899054	0.91[ASN][1000 genomes]
rs34546346	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34577487	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35976456	0.93[ASN][1000 genomes]
rs36092812	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4355456	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4645275	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59053231	0.91[ASN][1000 genomes]
rs59838410	0.85[ASN][1000 genomes]
rs60296378	0.85[ASN][1000 genomes]
rs6819574	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6826903	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6836376	0.87[ASN][1000 genomes]
rs6839870	0.91[ASN][1000 genomes]
rs73155601	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73162699	0.93[ASN][1000 genomes]
rs73162701	0.88[ASN][1000 genomes]
rs7672541	0.91[ASN][1000 genomes]
rs7676365	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3378090	chr4:56914220-56916768	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56914000-56916800	Active TSS	H1 Cell Line	embryonic stem cell
2	chr4:56914000-56917000	Active TSS	Cortex derived primary cultured neurospheres	brain
3	chr4:56914000-56917200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr4:56914200-56917000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:56914200-56917200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:56914200-56917400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:56914400-56915200	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr4:56914400-56915200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:56914400-56915200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:56914400-56915200	Flanking Active TSS	HUVEC	blood vessel
11	chr4:56914400-56917000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr4:56914400-56917200	Active TSS	Brain Substantia Nigra	brain
13	chr4:56914400-56917400	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr4:56914400-56917800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:56914600-56915200	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
16	chr4:56914600-56915200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:56914600-56915200	Active TSS	Right Atrium	heart
18	chr4:56914600-56915200	Flanking Active TSS	GM12878-XiMat	blood
19	chr4:56914600-56915200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
20	chr4:56914600-56915200	Flanking Bivalent TSS/Enh	NHDF-Ad	bronchial
21	chr4:56914600-56915400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
22	chr4:56914600-56915600	Active TSS	Brain Germinal Matrix	brain
23	chr4:56914600-56915800	Active TSS	Brain Cingulate Gyrus	brain
24	chr4:56914600-56915800	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr4:56914600-56916200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:56914600-56916400	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr4:56914600-56916400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:56914600-56916600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:56914600-56916600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:56914600-56916600	Active TSS	H9 Cell Line	embryonic stem cell
31	chr4:56914600-56916600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:56914600-56916600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr4:56914600-56916600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:56914600-56916600	Active TSS	Brain Angular Gyrus	brain
35	chr4:56914600-56916600	Active TSS	Brain Anterior Caudate	brain
36	chr4:56914600-56916600	Active TSS	Brain Hippocampus Middle	brain
37	chr4:56914600-56916600	Active TSS	Rectal Smooth Muscle	rectum
38	chr4:56914600-56916600	Active TSS	NHLF	lung
39	chr4:56914600-56916800	Active TSS	Ovary	ovary
40	chr4:56914600-56917000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:56914600-56917000	Active TSS	Fetal Intestine Large	intestine
42	chr4:56914600-56917000	Active TSS	Fetal Kidney	kidney
43	chr4:56914800-56915200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:56914800-56915200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr4:56914800-56915200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
46	chr4:56914800-56915200	Flanking Active TSS	Primary B cells from peripheral blood	blood
47	chr4:56914800-56915200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
48	chr4:56914800-56915200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
49	chr4:56914800-56915200	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
50	chr4:56914800-56915200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin

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