Variant report

Variant	rs73155601
Chromosome Location	chr4:56916573-56916574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56914879..56917642-chr4:56927334..56929102,2	MCF-7	breast:
2	chr4:56914423..56917343-chr4:56954991..56956586,2	MCF-7	breast:
3	chr4:56906651..56909346-chr4:56915136..56917400,3	MCF-7	breast:
4	chr4:56915544..56917169-chr4:56971414..56974217,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10517367	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11729231	0.84[EUR][1000 genomes]
rs11938852	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13112752	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17086249	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2412720	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2412721	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2412722	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2412725	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2412726	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2899054	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34546346	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34577487	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35204688	0.83[EUR][1000 genomes]
rs35976456	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36092812	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4355456	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58927874	0.83[EUR][1000 genomes]
rs59053231	0.95[ASN][1000 genomes]
rs59838410	0.88[ASN][1000 genomes]
rs60296378	0.88[ASN][1000 genomes]
rs6819574	0.95[ASN][1000 genomes]
rs6826903	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6836376	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6839870	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73155600	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73162699	0.96[ASN][1000 genomes]
rs73162701	0.91[ASN][1000 genomes]
rs7659294	0.83[EUR][1000 genomes]
rs7661471	0.81[EUR][1000 genomes]
rs7672541	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7676365	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7681714	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3378090	chr4:56914220-56916768	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56914000-56916800	Active TSS	H1 Cell Line	embryonic stem cell
2	chr4:56914000-56917000	Active TSS	Cortex derived primary cultured neurospheres	brain
3	chr4:56914000-56917200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr4:56914200-56917000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:56914200-56917200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:56914200-56917400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:56914400-56917000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr4:56914400-56917200	Active TSS	Brain Substantia Nigra	brain
9	chr4:56914400-56917400	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr4:56914400-56917800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:56914600-56916600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:56914600-56916600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:56914600-56916600	Active TSS	H9 Cell Line	embryonic stem cell
14	chr4:56914600-56916600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:56914600-56916600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:56914600-56916600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:56914600-56916600	Active TSS	Brain Angular Gyrus	brain
18	chr4:56914600-56916600	Active TSS	Brain Anterior Caudate	brain
19	chr4:56914600-56916600	Active TSS	Brain Hippocampus Middle	brain
20	chr4:56914600-56916600	Active TSS	Rectal Smooth Muscle	rectum
21	chr4:56914600-56916600	Active TSS	NHLF	lung
22	chr4:56914600-56916800	Active TSS	Ovary	ovary
23	chr4:56914600-56917000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:56914600-56917000	Active TSS	Fetal Intestine Large	intestine
25	chr4:56914600-56917000	Active TSS	Fetal Kidney	kidney
26	chr4:56914800-56916600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:56914800-56916600	Bivalent/Poised TSS	A549	lung
28	chr4:56914800-56916600	Active TSS	HSMMtube	muscle
29	chr4:56914800-56916800	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr4:56914800-56917000	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr4:56914800-56917200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr4:56914800-56919600	Active TSS	Fetal Brain Female	brain
33	chr4:56915000-56916600	Active TSS	Fetal Intestine Small	intestine
34	chr4:56915000-56916800	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr4:56915000-56916800	Active TSS	Hela-S3	cervix
36	chr4:56915200-56916600	Active TSS	Colonic Mucosa	Colon
37	chr4:56915200-56916600	Active TSS	Fetal Muscle Trunk	muscle
38	chr4:56915200-56916600	Active TSS	Rectal Mucosa Donor 31	rectum
39	chr4:56915200-56916600	Bivalent/Poised TSS	NHDF-Ad	bronchial
40	chr4:56915200-56916800	Active TSS	Fetal Stomach	stomach
41	chr4:56915200-56917200	Active TSS	Primary hematopoietic stem cells	blood
42	chr4:56915400-56916600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:56915600-56916600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
44	chr4:56915800-56916600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
45	chr4:56915800-56916600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr4:56915800-56916600	Flanking Active TSS	HUVEC	blood vessel
47	chr4:56915800-56917200	Active TSS	Fetal Brain Male	brain
48	chr4:56916000-56916600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
49	chr4:56916000-56916600	Bivalent Enhancer	Liver	Liver
50	chr4:56916000-56916600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum

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