Variant report

Variant	rs73156082
Chromosome Location	chr5:97334780-97334781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73145464	1.00[AFR][1000 genomes]
rs73156064	1.00[AFR][1000 genomes]
rs73156079	1.00[AFR][1000 genomes]
rs73157846	1.00[AFR][1000 genomes]
rs73157854	1.00[AFR][1000 genomes]
rs73157856	1.00[AFR][1000 genomes]
rs73157868	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020125	chr5:96937248-97350644	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1016231	chr5:97206242-97420435	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1021856	chr5:97258323-97414178	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv599062	chr5:97258619-97430527	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2830155	chr5:97278902-97425123	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv882404	chr5:97281641-97638743	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv4927	chr5:97312116-97357085	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1031989	chr5:97333291-97524353	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97333400-97335200	Enhancers	Brain Cingulate Gyrus	brain
2	chr5:97333600-97335400	Enhancers	Brain Anterior Caudate	brain
3	chr5:97333600-97336400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:97333800-97335600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:97333800-97336000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:97334000-97334800	Enhancers	Brain Angular Gyrus	brain
7	chr5:97334000-97335200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:97334000-97336000	Enhancers	Brain Substantia Nigra	brain
9	chr5:97334200-97335000	Enhancers	Brain Germinal Matrix	brain
10	chr5:97334400-97335000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:97334400-97335200	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:97334600-97335200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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